| Code |
13422
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| Year |
3
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| Semester |
S2
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| ECTS Credits |
6
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| Workload |
PL(30H)/T(30H)
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| Scientific area |
Biomedical Sciences
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Entry requirements |
None.
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Mode of delivery |
Face-to-face
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Learning outcomes |
The discipline aims to introduce students to different algorithms and computational techniques used in Bioinformatics, with a focus on their practical application.
Specific objectives:
O1) Familiarization with algorithms and computational techniques currently used in Bioinformatics and their application to problem-solving in biology and medicine.
O2) Exploration of computational tools and databases of interest for problem-solving in Bioinformatics.
O3) Identification of research directions in Bioinformatics.
O4) Acquisition and/or reinforcement of soft skills such as teamwork, analytical and argumentative abilities, discussion of ideas with peers and faculty, ...
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Syllabus |
1. Theoretical Component
1.1. Basic algorithm concepts
1.2. Basic programming concepts
1.3. Case studies on the application of algorithms in Bioinformatics
2. Practical Component (Python Programming)
2.1. Basic concepts
2.2. Variables
2.3. Decision and iteration
2.4. Decomposition, abstraction, and functions
2.5. Python and Rosalind
2.6. Python and NumPy
2.7. Python and Pandas
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Main Bibliography |
- Reading materials provided by the teacher.
- Bioinformatics: An Introduction, Jeremy Ramsden, Third Edition, Springer-Verlag London 2015.
- Algorithms in Bioinformatics: A Practical Introduction, Wing-Kin Sung, CRC Press 2010.
- Essential Bioinformatics, Jin Xiong Cambridge, University Press, 2006.
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Teaching Methodologies and Assessment Criteria |
Theoretical classes consist of the professor presenting the material followed by a discussion of the presented algorithms, supplemented with small theoretical-practical exercises. Practical classes involve the use of computers and group assignments. Students have the opportunity, guided by the professor, to use these tools and test different parameterizations.
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Language |
Portuguese. Tutorial support is available in English.
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